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<%--Copyright (C) 2011 Wolfgang Hankeln, Norma J. Wendel
	 
	This file is part of CDinFusion.
	
	CDinFusion is free software: you can redistribute it and/or
	modify it under the terms of the GNU Lesser General Public 
	License in version 3 (LGPL3) as published by the Free Software
	Foundation version 3 of the License.
	
	CDinFusion is distributed in the hope that it will be useful,
	but WITHOUT ANY WARRANTY; without even the implied warranty of
	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	Lesser General Public License for more details.
	
	You should have received a copy of the Lesser General Public
	License along with CDinFusion; see the file COPYING. If not,
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	Boston, MA 02111-1307, USA or see <http://www.gnu.org/licenses/>.
	
	If you have any questions, send an email to: megx@mpi-bremen.de.
--%>
<%
System.out.println("<<<<<<<<<< gsc_package_info >>>>>>>>>>");
%>
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<head>
<title>GSC Package Information</title>
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<%String item = request.getParameter("item");
if(item.equals("general")){%>
	<center><b>Information: GSC standard</b> <br><br>
	<strong>MIGS/MIMS</strong> (Minimum Information About a (Meta)Genome Sequence) outlines a conceptual structure for extending the core information that has been traditionally captured by the INSDC (DDBJ/EMBL/Genbank) to describe genomic and metagenomic sequences. The MIMS extension describes key aspects of environmental context (habitat).
	The <strong>MIMARKS</strong> standard complements the MIGS/MIMS specification for genomes and metagenomes by adding two new report types, a "MIMARKS-survey" and a "MIMARKS-specimen", the former being the checklist for uncultured diversity marker gene surveys, the latter is designed for marker gene sequences obtained from any material identifiable via specimens. A specific focus of the extended requirements is the sets of measurements and observations describing particular habitats, termed "environmental packages".<br><br>		
	</center>
<%}
if(item.equals("typeofreport")){%>
	<center><b>Information: type of report</b> <br><br>
		<strong>MIGS Genome sequences:</strong><br><%-- from any of the following organisms/ organelles: --%> 
		<strong>EU:</strong> for eukaryotic genome sequences,<br>
		<strong>BA:</strong> for bacerial/archaeal genome sequences,<br>
		<strong>PL:</strong> for plasmid "genome" sequences,<br>
		<strong>VI:</strong> for viral genome sequences,<br>
		<strong>ORG:</strong> for organelle genome sequences.
		<br><br>
		<strong>MIMS Metagenome sequence:</strong><br>
		<strong>ME:</strong> for metagenome sequence of any source.
		<br><br>
		<strong>MIMARKS Marker gene sequences:</strong><br>
		<strong>MIMARKS-survey:</strong> uncultured diversity,<br>
		<strong>MIMARKS-specimen:</strong> specimen/voucher/culture identifiable organism originating marker gene sequences.
	</center>
<%}else if(item.equals("environmentalpackage")){%>
	<center><b>Information: environmental package</b> <br><br>
		Fourteen "environmental-packages" provide a wealth of environmental and epidemiological contextual data fields for a complete description of sampling environments. Furthermore, the environmental packages can be combined with any of the GSC checklists as an extension section.
	</center>
<%}%>
</body>
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